Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs7293667 chr7:62082110 C/G 5.04E-6 368 24.33 20.05 14.37 KM Plot
CRC rs73002559 chr3:105824939 T/C 2.54E-10 371 22.4 19.93 4.87 KM Plot
CRC rs73049503 chr19:54013341 G/T 6.81E-8 366 22.35 23.3 5.2 KM Plot
CRC rs73120266 chr5:54579914 T/C 6.09E-5 371 22.3 24.2 9.67 KM Plot
CRC rs73122251 chr5:54675762 A/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs73227350 chr8:27392395 T/C 2.33E-5 368 22.57 19.6 16.07 KM Plot
CRC rs73501520 chr11:76430307 C/T 4.62E-5 365 22.4 20.23 10.2 KM Plot
CRC rs740591 chr19:42084586 G/A 3.04E-7 365 23.1 19.6 13.35 KM Plot
CRC rs74447887 chr6:53529219 A/G 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs74734238 chr6:53528444 T/A 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs75168938 chr6:53530047 C/A 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs75326369 chr5:56275972 C/G 7.87E-8 361 22.33 22.4 5.2 KM Plot
CRC rs75332545 chr6:53527070 A/G 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs7535394 chr1:146673962 C/T 8.95E-6 372 10.6 26.12 21.9 KM Plot
CRC rs7537279 chr1:146673642 A/G 8.95E-6 372 10.6 26.12 21.9 KM Plot